Things to check:
Are all the CTs properly closed round their respective wires?
Are the two MTU CTs oriented in the same way (red dots on both either towards or away from the breaker)?
Is there generation involved - can the direction of power flux through the breaker reverse under any reasonably likely circumstances? This will cause trouble because Spyder channels assume unidirectional flux.
Unless these checks bring up anything, you should probably raise a ticket on the main site. TED people are here quite frequently, but not necessarily every day. In my experience, tickets are responded to very promptly - usually within 24 hours. There have been some recent hardware changes requiring significant calibration corrections to be used for at least some combinations of CTs and ECCs.